MultiVeloVAE

Main

  • Usage
  • API

Notebooks

  • Single scRNA-seq dataset
  • Single multi-omic dataset (EB)
  • Single multi-omic dataset (mouse brain)
  • Integration of two multi-omic datasets with (de)coupling
  • Integration of two multi-omic datasets with differential test
  • Integration of scRNA and multi-omic datasets
  • Preprocessing of single multi-omic dataset
  • Preprocessing of two multi-omic datasets for integration
MultiVeloVAE
  • Index

Index

_ | A | D | F | I | K | M | R | S | T | V

_

  • __init__() (multivelovae.VAEChrom method)

A

  • aggregate_peaks_10x() (in module multivelovae)

D

  • decoupling_plot() (in module multivelovae)
  • differential_dynamics() (in module multivelovae)
  • differential_dynamics_plot() (in module multivelovae)
  • dynamic_plot() (in module multivelovae)

F

  • filter_genes_dispersion() (in module multivelovae)

I

  • is_outlier() (in module multivelovae)

K

  • knn_smooth_chrom() (in module multivelovae)

M

  • module
    • multivelovae
  • multivelovae
    • module

R

  • regress_out() (in module multivelovae)

S

  • scatter_plot() (in module multivelovae)

T

  • tfidf_norm() (in module multivelovae)

V

  • VAEChrom (class in multivelovae)
  • velocity() (in module multivelovae)
  • velocity_embedding_stream() (in module multivelovae)
  • velocity_graph() (in module multivelovae)

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